DATA UPLOAD PORTAL


Expression and mutation data can be uploaded and visualised using our tool to guide your analysis.

Generate your data in the format described below.
Alternatively, use our recommended Python script for your data that produces the expression data files.


My data files...

SELECT ORGANISM

Either human, mouse, fly or budding yeast data are accepted

UPLOAD DATA

Submit EXPRESSION (example) and MUTATION (optional - example) data in defined formats. Choose the column number of your file that corresponds to each column below. You could upload multiple files at the same time, or a single file that contains all the datasets. Fields marked with * have to be present in your file.

Expression file:
Column number of: Dataset ID* Gene Identifier* Expression of Wild type/Control Expression of Mutant/Tumor Log2 Fold Change* p-value
Mutation file (optional):
Column number of: Dataset ID* Gene Identifier* Chromosome* Position* Reference Allele* Alternative Allele* Effect Consequence




Warning: uploading data takes time! Please be patient and wait for the upload to finish!

Expression File Format

Only comma-separated-values (.csv) and tab-delimited (.tsv / .txt / .xls) files are accepted. Below is an example for the expression file in table format.
Or download a dataset file here. (Comma-delimited file containing a single human dataset with HGNC symbol as Gene Identifier)

Dataset ID+ Gene Identifier^ Control Mutant Log2Fold* p-value
dataset1 MT-CO2 5.14185 0.525591 -3.29027 0.04165
dataset1 EPHB2 21.6398 77.9794 1.84941 0.03615
dataset1 CD52 113.979 24.01 -2.24706 0.14155
dataset1 MFSD2A 2.671 16.7198 2.64611 0.0318

Note:
+ Dataset IDs have to be present if you have chosen to include them at the upload portal above
^ The type of gene identifier could be chosen at the upload portal above
* Fields marked with * have to be present in your file

Mutation File Format

Only comma-separated-values (.csv) and tab-delimited (.tsv / .txt / .xls) files are accepted. Below is an example for the mutation file in table format.
Or download a dataset file here. (Comma-delimited file containing a single human dataset with HGNC symbol as Gene Identifier)

Dataset ID+ Gene Identifier^ Chromosome* Position* Reference Allele* Alternative Allele* Mutation Type (Effect) Consequence
dataset1 MT-CO2 M 8159 T C SNP Missense
dataset1 AGO1 1 36391661 TGAA T DEL 3'UTR
dataset1 ITIH1 3 52825585 T C SNP Silent
dataset1 GPR35 2 241566012 G A SNP Intron

Note:
+ Dataset IDs have to be present if you have chosen to include them at the upload portal above
^ The type of gene identifier could be chosen at the upload portal above
* Fields marked with * have to be present in your file